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  1. Core Server
  2. SERVER-42946

Setting 4.2 FCV in standalone with existing transaction table crashes MongoDB

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    • Type: Icon: Bug Bug
    • Resolution: Fixed
    • Priority: Icon: Critical - P2 Critical - P2
    • 4.2.1
    • Affects Version/s: 4.2.0
    • Component/s: Upgrade/Downgrade
    • None
    • Fully Compatible
    • ALL
    • Hide
      • Running Ubuntu 18.04.3
      • Upgraded from MongoDb 4.0 to 4.2. (Feature compatibility is 4.0.)
      • Run apt-get commands as outlined in MongoDb instructions
      • Restart mongodb 
      • Verify that Mongo binaries are 4.2
      • Open up a shell and and run db.adminCommand*(* { setFeatureCompatibilityVersion*:* "4.2" } ) on admin db
      • MongoDb crashes
      Show
      Running Ubuntu 18.04.3 Upgraded from MongoDb 4.0 to 4.2. (Feature compatibility is 4.0.) Run apt-get commands as outlined in MongoDb instructions Restart mongodb  Verify that Mongo binaries are 4.2 Open up a shell and and run db.adminCommand*(* { setFeatureCompatibilityVersion*:* "4.2" } ) on admin db MongoDb crashes
    • Repl 2019-09-09, Repl 2019-09-23, Repl 2019-10-07

      Here's the mongo log upon failure:

      2019-08-21T19:40:51.308+0700 I SHARDING [conn5] Marking collection traveliko-analytics.bookingAnalyticsYearByCountryView as collection version: <unsharded>
      2019-08-21T19:40:51.308+0700 I SHARDING [conn5] Marking collection traveliko-analytics.roomCalendarRateRequestView as collection version: <unsharded>
      2019-08-21T19:40:51.308+0700 I SHARDING [conn5] Marking collection traveliko-analytics.hotelAnalyticsDayByCountryAndCityView as collection version: <unsharded>
      2019-08-21T19:40:51.311+0700 I SHARDING [conn5] Marking collection traveliko_eventstore.snapshotevents as collection version: <unsharded>
      2019-08-21T19:40:51.311+0700 I SHARDING [conn5] Marking collection traveliko_eventstore.domainevents as collection version: <unsharded>
      2019-08-21T19:40:51.312+0700 I COMMAND [conn5] Finished updating version of unique indexes for upgrade, waiting for all index updates to be committed at optime { ts: Timestamp(0, 0), t: -1 }
      2019-08-21T19:40:51.312+0700 F - [conn5] Invariant failure oplog src/mongo/db/transaction_history_iterator.cpp 91
      2019-08-21T19:40:51.312+0700 F - [conn5]

      ***aborting after invariant() failure

      2019-08-21T19:40:51.330+0700 F - [conn5] Got signal: 6 (Aborted).
      0x555f7237db31 0x555f7237d32e 0x555f7237d3c6 0x7f06af44d890 0x7f06af088e97 0x7f06af08a801 0x555f708b6350 0x555f70726a4d 0x555f711b8e1e 0x555f711c3ff2 0x555f711afbaf 0x555f70df4846 0x555f70df6dd9 0x555f71d8d254 0x555f70cf7f09 0x555f70cf95c3 0x555f70cfa47e 0x555f70cfad50 0x555f70ce8d4c 0x555f70cf493c 0x555f70cf028f 0x555f70cf350c 0x555f71ad55e2 0x555f70cedcad 0x555f70cf0f43 0x555f70cef377 0x555f70cf01eb 0x555f70cf350c 0x555f71ad5a4b 0x555f7210fc64 0x7f06af4426db 0x7f06af16b88f
      ----- BEGIN BACKTRACE -----

      {"backtrace":[\{"b":"555F6FBFD000","o":"2780B31","s":"_ZN5mongo15printStackTraceERSo"}

      ,{"b":"555F6FBFD000","o":"278032E"},{"b":"555F6FBFD000","o":"27803C6"},{"b":"7F06AF43B000","o":"12890"},{"b":"7F06AF04A000","o":"3EE97","s":"gsignal"},{"b":"7F06AF04A000","o":"40801","s":"abort"},{"b":"555F6FBFD000","o":"CB9350","s":"ZN5mongo22invariantFailedWithMsgEPKcRKNSt7_cxx1112basic_stringIcSt11char_traitsIcESaIcEEES1_j"},{"b":"555F6FBFD000","o":"B29A4D"},{"b":"555F6FBFD000","o":"15BBE1E","s":"_ZN5mongo26TransactionHistoryIterator4nextEPNS_16OperationContextE"},{"b":"555F6FBFD000","o":"15C6FF2","s":"_ZN5mongo22TransactionParticipant11Participant26refreshFromStorageIfNeededEPNS_16OperationContextE"},{"b":"555F6FBFD000","o":"15B2BAF","s":"_ZN5mongo29MongoDOperationContextSessionC2EPNS_16OperationContextE"},{"b":"555F6FBFD000","o":"11F7846"},{"b":"555F6FBFD000","o":"11F9DD9"},{"b":"555F6FBFD000","o":"2190254","s":"_ZN5mongo12BasicCommand10Invocation3runEPNS_16OperationContextEPNS_3rpc21ReplyBuilderInterfaceE"},{"b":"555F6FBFD000","o":"10FAF09"},{"b":"555F6FBFD000","o":"10FC5C3"},{"b":"555F6FBFD000","o":"10FD47E"},{"b":"555F6FBFD000","o":"10FDD50","s":"_ZN5mongo23ServiceEntryPointCommon13handleRequestEPNS_16OperationContextERKNS_7MessageERKNS0_5HooksE"},{"b":"555F6FBFD000","o":"10EBD4C","s":"_ZN5mongo23ServiceEntryPointMongod13handleRequestEPNS_16OperationContextERKNS_7MessageE"},{"b":"555F6FBFD000","o":"10F793C","s":"_ZN5mongo19ServiceStateMachine15_processMessageENS0_11ThreadGuardE"},{"b":"555F6FBFD000","o":"10F328F","s":"_ZN5mongo19ServiceStateMachine15_runNextInGuardENS0_11ThreadGuardE"},{"b":"555F6FBFD000","o":"10F650C"},{"b":"555F6FBFD000","o":"1ED85E2","s":"_ZN5mongo9transport26ServiceExecutorSynchronous8scheduleESt8functionIFvvEENS0_15ServiceExecutor13ScheduleFlagsENS0_23ServiceExecutorTaskNameE"},{"b":"555F6FBFD000","o":"10F0CAD","s":"_ZN5mongo19ServiceStateMachine22_scheduleNextWithGuardENS0_11ThreadGuardENS_9transport15ServiceExecutor13ScheduleFlagsENS2_23ServiceExecutorTaskNameENS0_9OwnershipE"},{"b":"555F6FBFD000","o":"10F3F43","s":"_ZN5mongo19ServiceStateMachine15_sourceCallbackENS_6StatusE"},{"b":"555F6FBFD000","o":"10F2377","s":"_ZN5mongo19ServiceStateMachine14_sourceMessageENS0_11ThreadGuardE"},{"b":"555F6FBFD000","o":"10F31EB","s":"_ZN5mongo19ServiceStateMachine15_runNextInGuardENS0_11ThreadGuardE"},{"b":"555F6FBFD000","o":"10F650C"},{"b":"555F6FBFD000","o":"1ED8A4B"},{"b":"555F6FBFD000","o":"2512C64"},{"b":"7F06AF43B000","o":"76DB"},{"b":"7F06AF04A000","o":"12188F","s":"clone"}],"processInfo":{ "mongodbVersion" : "4.2.0", "gitVersion" : "a4b751dcf51dd249c5865812b390cfd1c0129c30", "compiledModules" : [], "uname" :

      { "sysname" : "Linux", "release" : "4.15.0-58-generic", "version" : "#64-Ubuntu SMP Tue Aug 6 11:12:41 UTC 2019", "machine" : "x86_64" }

      , "somap" : [ { "b" : "555F6FBFD000", "elfType" : 3, "buildId" : "D849CC14858F969B5888F892C9E16777E4C6FF32" }, { "b" : "7FFD9E2FC000", "path" : "linux-vdso.so.1", "elfType" : 3, "buildId" : "D523EBC9181DE86DAB768A6167F8B401D3054550" }, { "b" : "7F06B098F000", "path" : "/usr/lib/x86_64-linux-gnu/libcurl.so.4", "elfType" : 3, "buildId" : "20310A72634F3373FA7BCAB64DFB64CC204554B2" }, { "b" : "7F06B0774000", "path" : "/lib/x86_64-linux-gnu/libresolv.so.2", "elfType" : 3, "buildId" : "390E9CC4C215314B6D8ADE6D6E28F8518418039C" }, { "b" : "7F06B02A9000", "path" : "/usr/lib/x86_64-linux-gnu/libcrypto.so.1.1", "elfType" : 3, "buildId" : "CB6876717C83B0CC01C3C919B9B6E86D8554F546" }, { "b" : "7F06B001C000", "path" : "/usr/lib/x86_64-linux-gnu/libssl.so.1.1", "elfType" : 3, "buildId" : "439A262CC0127BA401707DEC7A28884D617550E0" }, { "b" : "7F06AFE18000", "path" : "/lib/x86_64-linux-gnu/libdl.so.2", "elfType" : 3, "buildId" : "25AD56E902E23B490A9CCDB08A9744D89CB95BCC" }, { "b" : "7F06AFC10000", "path" : "/lib/x86_64-linux-gnu/librt.so.1", "elfType" : 3, "buildId" : "9826FBDF57ED7D6965131074CB3C08B1009C1CD8" }, { "b" : "7F06AF872000", "path" : "/lib/x86_64-linux-gnu/libm.so.6", "elfType" : 3, "buildId" : "A33761AB8FB485311B3C85BF4253099D7CABE653" }, { "b" : "7F06AF65A000", "path" : "/lib/x86_64-linux-gnu/libgcc_s.so.1", "elfType" : 3, "buildId" : "41BDC55C07D5E5B1D8AB38E2C19B1F535855E084" }, { "b" : "7F06AF43B000", "path" : "/lib/x86_64-linux-gnu/libpthread.so.0", "elfType" : 3, "buildId" : "28C6AADE70B2D40D1F0F3D0A1A0CAD1AB816448F" }, { "b" : "7F06AF04A000", "path" : "/lib/x86_64-linux-gnu/libc.so.6", "elfType" : 3, "buildId" : "B417C0BA7CC5CF06D1D1BED6652CEDB9253C60D0" }, { "b" : "7F06B0C0E000", "path" : "/lib64/ld-linux-x86-64.so.2", "elfType" : 3, "buildId" : "64DF1B961228382FE18684249ED800AB1DCEAAD4" }, { "b" : "7F06AEE25000", "path" : "/usr/lib/x86_64-linux-gnu/libnghttp2.so.14", "elfType" : 3, "buildId" : "4F00E5207693FDC249DA42EC6472ACA6A7B929AE" }, { "b" : "7F06AEC08000", "path" : "/usr/lib/x86_64-linux-gnu/libidn2.so.0", "elfType" : 3, "buildId" : "BA5BF9A5C44F48C647E9D8270A5421AE81CCAD61" }, { "b" : "7F06AE9EC000", "path" : "/usr/lib/x86_64-linux-gnu/librtmp.so.1", "elfType" : 3, "buildId" : "69465D8AA6B19086ABF2455A703F9168BF82A69F" }, { "b" : "7F06AE7DE000", "path" : "/usr/lib/x86_64-linux-gnu/libpsl.so.5", "elfType" : 3, "buildId" : "CDAF1F1946846941F9D06414EC8C812D131A168E" }, { "b" : "7F06AE593000", "path" : "/usr/lib/x86_64-linux-gnu/libgssapi_krb5.so.2", "elfType" : 3, "buildId" : "00F419F64B0E70D8C5EEF7050369AA40B2A6E090" }, { "b" : "7F06AE341000", "path" : "/usr/lib/x86_64-linux-gnu/libldap_r-2.4.so.2", "elfType" : 3, "buildId" : "EC29F33C48F75AA2C48BA08E0F74D9546622314D" }, { "b" : "7F06AE133000", "path" : "/usr/lib/x86_64-linux-gnu/liblber-2.4.so.2", "elfType" : 3, "buildId" : "25604CADD65A7057CB774139D0CBDF14460C1C78" }, { "b" : "7F06ADF16000", "path" : "/lib/x86_64-linux-gnu/libz.so.1", "elfType" : 3, "buildId" : "EF3E006DFE3132A41D4D4DC0E407D6EA658E11C4" }, { "b" : "7F06ADB98000", "path" : "/usr/lib/x86_64-linux-gnu/libunistring.so.2", "elfType" : 3, "buildId" : "0E2784298E7D3F4D894FE130ACEFA77C3E624F72" }, { "b" : "7F06AD833000", "path" : "/usr/lib/x86_64-linux-gnu/libgnutls.so.30", "elfType" : 3, "buildId" : "E5AE5C31F804BE96532D0DB2091F19E472F2D4A0" }, { "b" : "7F06AD5FF000", "path" : "/usr/lib/x86_64-linux-gnu/libhogweed.so.4", "elfType" : 3, "buildId" : "842BDF0B0EAAB82E19F1EABFC38769F4040FBE31" }, { "b" : "7F06AD3C9000", "path" : "/usr/lib/x86_64-linux-gnu/libnettle.so.6", "elfType" : 3, "buildId" : "C20D4B3BA13FCDCC3BF6857689BA9FC70BE3F6A5" }, { "b" : "7F06AD148000", "path" : "/usr/lib/x86_64-linux-gnu/libgmp.so.10", "elfType" : 3, "buildId" : "D40EA9B5EC5BC46799E4A412319617BD38BE9341" }, { "b" : "7F06ACE72000", "path" : "/usr/lib/x86_64-linux-gnu/libkrb5.so.3", "elfType" : 3, "buildId" : "69FBCF425EE6DF03DE93B82FBC2FC33790E68A96" }, { "b" : "7F06ACC40000", "path" : "/usr/lib/x86_64-linux-gnu/libk5crypto.so.3", "elfType" : 3, "buildId" : "F400D5D643A7F9696DF0E6148FA99BEE6C1BDDF7" }, { "b" : "7F06ACA3C000", "path" : "/lib/x86_64-linux-gnu/libcom_err.so.2", "elfType" : 3, "buildId" : "C0CB7E35A4566A443F99DFBC1A54D3A0677C8A10" }, { "b" : "7F06AC831000", "path" : "/usr/lib/x86_64-linux-gnu/libkrb5support.so.0", "elfType" : 3, "buildId" : "D78D71E8E016A534281B25B97CD7E5E9DB5FE00A" }, { "b" : "7F06AC616000", "path" : "/usr/lib/x86_64-linux-gnu/libsasl2.so.2", "elfType" : 3, "buildId" : "ABB7E3F40302E6509DAD1F91DFB1F04B6A5FD072" }, { "b" : "7F06AC3D5000", "path" : "/usr/lib/x86_64-linux-gnu/libgssapi.so.3", "elfType" : 3, "buildId" : "A1A98DB481968073636BBAECB561A3EA8ED198AE" }, { "b" : "7F06AC0A6000", "path" : "/usr/lib/x86_64-linux-gnu/libp11-kit.so.0", "elfType" : 3, "buildId" : "8DBD451EA5651283905E16FA7DFA9908688893A3" }, { "b" : "7F06ABE93000", "path" : "/usr/lib/x86_64-linux-gnu/libtasn1.so.6", "elfType" : 3, "buildId" : "6036B89A3BB671B32E01464C0C82BFA016186352" }, { "b" : "7F06ABC8F000", "path" : "/lib/x86_64-linux-gnu/libkeyutils.so.1", "elfType" : 3, "buildId" : "F463E107B099910463BC32E837C73D341A52C27B" }, { "b" : "7F06ABA86000", "path" : "/usr/lib/x86_64-linux-gnu/libheimntlm.so.0", "elfType" : 3, "buildId" : "C2376C5B831991591F1A67B976758185F86896D8" }, { "b" : "7F06AB7F9000", "path" : "/usr/lib/x86_64-linux-gnu/libkrb5.so.26", "elfType" : 3, "buildId" : "69BDEE5FA0FEEDF317308BE850F78761861D520A" }, { "b" : "7F06AB557000", "path" : "/usr/lib/x86_64-linux-gnu/libasn1.so.8", "elfType" : 3, "buildId" : "315D74995AAA32DE4D15BA25F335066988B1B230" }, { "b" : "7F06AB321000", "path" : "/usr/lib/x86_64-linux-gnu/libhcrypto.so.4", "elfType" : 3, "buildId" : "6673972A1C24A89EBAFBAE696188A4CB26C6DDEB" }, { "b" : "7F06AB10B000", "path" : "/usr/lib/x86_64-linux-gnu/libroken.so.18", "elfType" : 3, "buildId" : "430827C33259C12248CF44B91A9A9821114376F5" }, { "b" : "7F06AAF03000", "path" : "/usr/lib/x86_64-linux-gnu/libffi.so.6", "elfType" : 3, "buildId" : "3555B5F599C9787DFDDBF9E8DF6F706B9044D985" }, { "b" : "7F06AACDA000", "path" : "/usr/lib/x86_64-linux-gnu/libwind.so.0", "elfType" : 3, "buildId" : "93A0931B1C2818F0EA224CE6FE5E31E84A9B55BB" }, { "b" : "7F06AAACB000", "path" : "/usr/lib/x86_64-linux-gnu/libheimbase.so.1", "elfType" : 3, "buildId" : "669D4CCE42FA4382796EFFCF0C16F459F4382C4C" }, { "b" : "7F06AA881000", "path" : "/usr/lib/x86_64-linux-gnu/libhx509.so.5", "elfType" : 3, "buildId" : "4B80C543356EE0AF9039EFE7C9EA1CC1F74C426A" }, { "b" : "7F06AA578000", "path" : "/usr/lib/x86_64-linux-gnu/libsqlite3.so.0", "elfType" : 3, "buildId" : "BCE351987CF42B3D258B09F0CAC867758D935086" }, { "b" : "7F06AA340000", "path" : "/lib/x86_64-linux-gnu/libcrypt.so.1", "elfType" : 3, "buildId" : "810686AF0D5FD350A4FB1CC4B5AFF44A05C102CB" } ] }}
      mongod(_ZN5mongo15printStackTraceERSo+0x41) [0x555f7237db31]
      mongod(+0x278032E) [0x555f7237d32e]
      mongod(+0x27803C6) [0x555f7237d3c6]
      libpthread.so.0(+0x12890) [0x7f06af44d890]
      libc.so.6(gsignal+0xC7) [0x7f06af088e97]
      libc.so.6(abort+0x141) [0x7f06af08a801]
      mongod(ZN5mongo22invariantFailedWithMsgEPKcRKNSt7_cxx1112basic_stringIcSt11char_traitsIcESaIcEEES1_j+0x0) [0x555f708b6350]
      mongod(+0xB29A4D) [0x555f70726a4d]
      mongod(_ZN5mongo26TransactionHistoryIterator4nextEPNS_16OperationContextE+0x4E) [0x555f711b8e1e]
      mongod(_ZN5mongo22TransactionParticipant11Participant26refreshFromStorageIfNeededEPNS_16OperationContextE+0x802) [0x555f711c3ff2]
      mongod(_ZN5mongo29MongoDOperationContextSessionC2EPNS_16OperationContextE+0x4F) [0x555f711afbaf]
      mongod(+0x11F7846) [0x555f70df4846]
      mongod(+0x11F9DD9) [0x555f70df6dd9]
      mongod(_ZN5mongo12BasicCommand10Invocation3runEPNS_16OperationContextEPNS_3rpc21ReplyBuilderInterfaceE+0x74) [0x555f71d8d254]
      mongod(+0x10FAF09) [0x555f70cf7f09]
      mongod(+0x10FC5C3) [0x555f70cf95c3]
      mongod(+0x10FD47E) [0x555f70cfa47e]
      mongod(_ZN5mongo23ServiceEntryPointCommon13handleRequestEPNS_16OperationContextERKNS_7MessageERKNS0_5HooksE+0x540) [0x555f70cfad50]
      mongod(_ZN5mongo23ServiceEntryPointMongod13handleRequestEPNS_16OperationContextERKNS_7MessageE+0x3C) [0x555f70ce8d4c]
      mongod(_ZN5mongo19ServiceStateMachine15_processMessageENS0_11ThreadGuardE+0xEC) [0x555f70cf493c]
      mongod(_ZN5mongo19ServiceStateMachine15_runNextInGuardENS0_11ThreadGuardE+0x17F) [0x555f70cf028f]
      mongod(+0x10F650C) [0x555f70cf350c]
      mongod(_ZN5mongo9transport26ServiceExecutorSynchronous8scheduleESt8functionIFvvEENS0_15ServiceExecutor13ScheduleFlagsENS0_23ServiceExecutorTaskNameE+0x182) [0x555f71ad55e2]
      mongod(_ZN5mongo19ServiceStateMachine22_scheduleNextWithGuardENS0_11ThreadGuardENS_9transport15ServiceExecutor13ScheduleFlagsENS2_23ServiceExecutorTaskNameENS0_9OwnershipE+0x10D) [0x555f70cedcad]
      mongod(_ZN5mongo19ServiceStateMachine15_sourceCallbackENS_6StatusE+0x843) [0x555f70cf0f43]
      mongod(_ZN5mongo19ServiceStateMachine14_sourceMessageENS0_11ThreadGuardE+0x2E7) [0x555f70cef377]
      mongod(_ZN5mongo19ServiceStateMachine15_runNextInGuardENS0_11ThreadGuardE+0xDB) [0x555f70cf01eb]
      mongod(+0x10F650C) [0x555f70cf350c]
      mongod(+0x1ED8A4B) [0x555f71ad5a4b]
      mongod(+0x2512C64) [0x555f7210fc64]
      libpthread.so.0(+0x76DB) [0x7f06af4426db]
      libc.so.6(clone+0x3F) [0x7f06af16b88f]
      ----- END BACKTRACE -----

        1. mongod_log.txt
          38 kB
          Bjorn Harvold
        2. mongod_log.txt
          48 kB
          Bjorn Harvold

            Assignee:
            jason.chan@mongodb.com Jason Chan
            Reporter:
            bjorn.harvold@traveliko.com Bjorn Harvold
            Votes:
            0 Vote for this issue
            Watchers:
            17 Start watching this issue

              Created:
              Updated:
              Resolved: