1. Avoid triggering the old visibility update loop and other related things
2. Replace getAllDurableTimestamp() with the corresponding function in the new oplog visibility manger.
3. Replace waitForAllEarlierOplogWritesToBeVisible() with the corresponding function in the new oplog visibility mange.

The first version just need to make end-to-end JS tests work, no need to update those used by unit tests. We can try to make everything work later on.