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Is there a smart way to do this?

Can we force the config database to be restored first and then force a metadata update before loading the rest of the dump?

depends on

SERVER-4087 Add setting to disable auto-splitting and auto-migrations

TOOLS-127 Add option to mongorestore to exclude the given database (or databases)

is depended on by

SERVER-4992 Disable dropDatabase command on "config" if sharded collections exist with data

is duplicated by

SERVER-5734 mongodump shouldn't export config database by default

is related to

TOOLS-116 Ability to mongorestore to shards with different names